Browsing by Author "8bbfb7ed-9192-410a-a728-d8f8eb4cba6f"

Now showing items 1-18 of 18

    • Cdk5 regulates Rap1 activity 
      Utreras Puratich, Elías; Henríquez, Daniel R.; Contreras Vallejos, Erick; Olmos, Cristina; Di Genova, Alex; Maass Sepúlveda, Alejandro; Kulkarni, Ashok B.; González Billault, Christian (2013)
      Rap1 signaling is important for migration, differentiation, axonal growth, and during neuronal polarity. Rap1 can be activated by external stimuli, which in turn regulates specific guanine nucleotide exchange factors such ...
    • Comparing genomic signatures of domestication in two Atlantic salmon (Salmo salar L.) populations with ... 
      López, Maria E.; Benestan, Laura; Moore, Jean Sebastien; Perrier, Charles; Gilbey, John; Di Genova, Alex; Maass Sepúlveda, Alejandro; Diaz, Diego; Lhorente, Jean Paul; Correa, Katharina; Neira Roa, Roberto; Bernatchez, Louis; Yáñez López, José (Wiley-Blackwell, 2019)
      © 2018 The Authors. Evolutionary Applications published by John Wiley & Sons LtdSelective breeding and genetic improvement have left detectable signatures on the genomes of domestic species. The elucidation of such signatures ...
    • Construction of Reference Chromosome-Scale Pseudomolecules for Potato: Integrating the Potato Genome with ... 
      Sharma, Sanjeev Kumar; Bolser, Daniel; de Boer, Jan; Sønderkær, Mads; Amoros, Walter; Carboni, Martín Federico; D'Ambrosio, Juan Martín; Cruz, Germán de la; Di Genova, Alex; Douches, David S.; Eguiluz, María; Guo, Xiao; Guzman, Frank; Hackett, Christine A.; Hamilton, John P.; Guangcun, Li; Li, Ying; Lozano, Roberto; Maass Sepúlveda, Alejandro; Marshall, David; Martinez, Diana; McLean, Karen; Mejía, Nilo; Milne, Linda; Munive, Susan; Nagy, Istvan; Ponce, Olga; Ramirez, Manuel; Simon, Reinhard; Thomson, Susan J.; Torres, Yerisf; Waugh, Robbie; Zhang, Zhongua; Huang, Sanwen; Visser, Richard G. F.; Bachem, Christian W. B.; Sagredo, Boris; Feingold, Sergio E.; Orjeda, Gisella; Veilleux, Richard E.; Bonierbale, Merideth; Jacobs, Jeanne M. E.; Milbourne, Dan; Martin, David Michael; Bryan, Glenn J. (2013)
      The genome of potato, a major global food crop, was recently sequenced. The work presented here details the integration of the potato reference genome (DM) with a new sequence-tagged site marker2based linkage map and ...
    • Development of a small panel of SNPs to infer ancestry in chileans that distinguishes Aymara and Mapuche components 
      Verdugo Salgado, Ricardo; Di Genova, Alex; Herrera Cisterna, Luisa; Moraga Vergara, Mauricio; Acuña Patzke, Mónica; Berríos del Solar, María Soledad; Llop Romero, Elena; Valenzuela, Carlos Y.; Bustamante Calderón, María Leonor; Digman, Dayhana; Symon Maturana, Adriana; Asenjo, Soledad; López Contreras, Pamela; Blanco, Alejandro E.; Suazo Sanhueza, José; Barozet, Emmanuelle; Caba, Fresia; Villalón Calderón, Marcelo; Alvarado Orellana, Sergio; Cáceres Lillo, Dante; Salgado, Katherine; Portales, Pilar; Moreno Estrada, Andrés; Gignoux, Christopher; Sandoval, Karla; Bustamante, Carlos; Eng, Celeste; Huntsman, Scott; Burchard, Esteban; Loira, Nicolás; Maass Sepúlveda, Alejandro; Cifuentes Ovalle, Lucía (Sociedad de Biología de Chile, 2020)
      Background Current South American populations trace their origins mainly to three continental ancestries, i.e. European, Amerindian and African. Individual variation in relative proportions of each of these ancestries may ...
    • Draft genome sequence of the sulfobacillus thermosulfidooxidans cutipay strain, an indigenous bacterium ... 
      Travisany, Dante; Di Genova, Alex; Sepúlveda, Andrea; Bobadilla-Fazzini, Roberto A.; Parada, Pilar; Maass Sepúlveda, Alejandro (2012)
      Sulfobacillus thermosulfidooxidans strain Cutipay is a mixotrophic, acidophilic, moderately thermophilic bacterium isolated from mining environments of the north of Chile, making it an interesting subject for studying the ...
    • Extent of genome-wide linkage disequilibrium in farmed Atlantic salmon (Salmo salar L.) using highdensity genotypes 
      Yáñez López, José; Correa, K.; López, M. E.; Lhorente, Jean Paul; Figueroa, R.; Bassini, Liane; Di Genova, Alex; Maass Sepúlveda, Alejandro (Elsevier, 2017)
    • Genome wide association analysis for resistance to Caligus rogercresseyi in Atlantic salmon (Salmo salar L.) 
      Correa, K.; Lhorente, Jean Paul; López, M. E.; Figuera, R.; Bassini, Liane; Di Genova, Alex; Maass Sepúlveda, Alejandro; Davidson, W.; Yáñez López, José (Elsevier, 2017)
    • Genome wide association study for resistance to Caligus rogercresseyi in Atlantic salmon (Salmo salar L.) ... 
      Correa, Katharina; Lhorente, Jean Paul; Bassini, Liane; López, María E.; Di Genova, Alex; Maass Sepúlveda, Alejandro; Davidson, William S.; Yáñez López, José (Elsevier, 2017)
      The sea louse (Caligus rogercresseyi) is an external parasite and considered one of the most important health problems in the salmon farming industry. Resistance to conventional chemical treatments has been demonstrated ...
    • Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild ... 
      Yáñez López, José; Naswa, S.; López, M. E.; Bassini, Liane; Correa, K.; Gilbey, J.; Bernatchez, L.; Norris, A.; Lhorente, Jean Paul; Schnable, P. S.; Newman, S.; Mileham, A.; Deeb, N.; Di Genova, Alex; Maass Sepúlveda, Alejandro (2016)
      A considerable number of single nucleotide polymorphisms (SNPs) are required to elucidate genotype-phenotype associations and determine the molecular basis of important traits. In this work, we carried out de novo SNP ...
    • Global gene expression analysis provides insight into local adaptation to geothermal streams in tadpoles ... 
      Pastenes, Luis; Valdivieso, Camilo; Di Genova, Alex; Travisany, Dante; Hart, Andrew; Montecino, Martín; Orellana, Ariel; Gonzalez, Mauricio; Gutiérrez, Rodrigo A.; Allende Connelly, Miguel; Maass Sepúlveda, Alejandro; Méndez, Marco A. (Nature Publishing Group, 2017)
      © 2017 The Author(s). The anuran Rhinella spinulosa is distributed along the Andes Range at altitudes that undergo wide daily and seasonal variation in temperature. One of the populations inhabits geothermal streams, a ...
    • Identification of SNPs and InDels associated with berry size in table grapes integrating genetic and ... 
      Muñoz Espinoza, Claudia; Di Genova, Alex; Sanchez, Alicia; Correa, José; Espinoza, Alonso; Meneses, Claudio; Maass Sepúlveda, Alejandro; Orellana, Ariel; Hinrichsen, Patricio (BMC, 2020)
      BackgroundBerry size is considered as one of the main selection criteria in table grapes breeding programs, due to the consumer preferences. However, berry size is a complex quantitive trait under polygenic control, and ...
    • Identification of two putative reference genes from grapevine suitable for gene expression analysis in berry ... 
      González Agüero, Mauricio; García-Rojas, Miguel; Di Genova, Alex; Correa, José; Maass Sepúlveda, Alejandro; Orellana, Ariel; Hinrichsen, Patricio (2013)
      Background: Data normalization is a key step in gene expression analysis by qPCR. Endogenous control genes are used to estimate variations and experimental errors occurring during sample preparation and expression measurements. ...
    • Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to ... 
      Loira, Nicolás; Mendoza, Sebastián; Cortés, María Paz; Rojas, Natalia; Travisany, Dante; Di Genova, Alex; Gajardo, Natalia; Ehrenfeld, Nicole; Maass Sepúlveda, Alejandro (Biomed Central Ltd., 2017)
      Background: Nannochloropsis salina (= Eustigmatophyceae) is a marine microalga which has become a biotechnological target because of its high capacity to produce polyunsaturated fatty acids and triacylglycerols. It has ...
    • RNA-Seq analysis and transcriptome assembly of raspberry fruit (Rubus idaeus ¨Heritage¨) revealed several ... 
      Travisany, Dante; Ayala-Raso, Anibal; Di Genova, Alex; Monsalve, Liliam; Bernales, Maricarmen; Martínez, Juan Pablo; González Agüero, Mauricio; Defilippi, Bruno; Cherian, Sam; Maass Sepúlveda, Alejandro; Fuentes, Lida (Elsevier B.V., 2019)
      Using Illumina HiSeq ™ 2000 sequencing platform (100 bp double-end reads), we performed transcriptome analysis of flower (F), green (G) and pink (P) fruit stages of red raspberry. Transcriptome was obtained by the de-novo ...
    • The Atlantic salmon genome provides insights into rediploidization 
      Lien, Sigbjorn; Koop, Ben F.; Sandve, Simen R.; Miller, Jason R.; Kent, Matthew P.; Nome, Torfinn; Hvidsten, Torgeir R.; Leong, Jong S.; Minkley, David R.; Zimin, Aleksey; Grammes, Fabián; Grove, Harald; Gjuvsland, Arne; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kris; Rondeau, Eric B.; Di Genova, Alex; Samy, Jeevan; Vik, Jon Olav; Vigeland, Magnus D.; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Vage, Dag Inge; de Jong, Pieter; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas R.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill S.; Jiang, Xuanting; Fan, Dingding; Liberles, David A.; Vidal, Rodrigo; Iturra Constant, Patricia; Jones, Steven J.; Jonassen, Inge; Maass Sepúlveda, Alejandro; Omholt, Stig W.; Davidson, William S. (Nature, 2016)
      The whole-genome duplication 80 million years ago of the common ancestor of salmonids (salmonid-specific fourth vertebrate whole-genome duplication, Ss4R) provides unique opportunities to learn about the evolutionary fate ...
    • The bioleaching potential of a bacterial consortium 
      Latorre Mora, Mauricio; Cortés Burgos, María Paz; Travisany, Dante; Di Genova, Alex; Budinich Abarca, Marko; Reyes Jara, Angélica; Hödar Quiroga, Christian; González Canales, Mauricio; Parada, Pilar; Bobadilla Fazzini, Roberto; Cambiazo Ayala, Liliana; Maass Sepúlveda, Alejandro (Elsevier, 2016)
      This work presents the molecular foundation of a consortium of five efficient bacteria strains isolated from copper mines currently used in state of the art industrial-scale biotechnology. The strains Acidithiobacillus ...
    • Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes ... 
      Muñoz Espinoza, Claudia; Di Genova, Alex; Correa Haeussler, José; Maass Sepúlveda, Alejandro; González Agüero, Mauricio; Orellana, Ariel; Hinrichsen, Patricio; Silva, Romina (Biomed Central, 2016)
      FONDEF-Chile Genoma Program G07I-1002 Fondecyt 1120888 3150519 Mecesup Program Fondap 15090007 Basal project PB-16 National Laboratory for High Performance Computing at the Center for Mathematical ...
    • Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans 
      Vidal, Elena A.; Moyano, Tomás C.; Bustos, Bernabé I.; Pérez-Palma, Eduardo; Moraga, Carol; Riveras, Eleodoro; Montecinos, Alejandro; Azócar, Lorena; Soto, Daniela C.; Vidal, Mabel; Di Genova, Alex; Puschel, Klaus; Nürnberg, Peter; Buch, Stephan; Hampe, Jochen; Allende, (Nature Publishing Group, 2019)
      Whole human genome sequencing initiatives help us understand population history and the basis of genetic diseases. Current data mostly focuses on Old World populations, and the information of the genomic structure of Native ...