Drawing on de Sousa Santos’s work on Epistemologies of the South (2014), this paper critically examines the patterns of publication in higher education studies in mainstream and non-mainstream journals in Latin American between 2000 and 2015. An analysis of 1370 papers—130 indexed in the Web of Science (WoS) core collection indexes and 1240 indexed in the Scientific Electronic Library Online index (SciELO)—indicates that Latin American academics are engaged in lively practices of publication. However, a dual pattern of publication is identified, characterised by researchers extensively publishing in non-mainstream journals and also maintaining a presence in mainstream journals. Issues related to language, rankings and prestige, the North/South divide, the distinction between hard/basic and soft/applied sciences and the nature of higher education studies are used to explain such a pattern. Although there is a tense process of securing a dual epistemic recognition, there is also a positive tension that involves collaboration across a plurality of knowledges. Finally, this paper offers the concept of zones of epistemic influence, which opens spaces for an ecology of knowledges in which knowledges from both the North and the South constitute a new assemblage that accords due weight to a plurality of epistemic interests.