Show simple item record

Authordc.contributor.authorYoshida, Grazyella M. 
Authordc.contributor.authorYáñez López, José 
Admission datedc.date.accessioned2021-09-10T19:01:18Z
Available datedc.date.available2021-09-10T19:01:18Z
Publication datedc.date.issued2021
Cita de ítemdc.identifier.citationBMC Genomics (2021) 22:57es_ES
Identifierdc.identifier.other10.1186/s12864-020-07341-z
Identifierdc.identifier.urihttp://repositorio.uchile.cl/handle/2250/181966
Abstractdc.description.abstractBackground: Body traits are generally controlled by several genes in vertebrates (i.e. polygenes), which in turn make them difficult to identify through association mapping. Increasing the power of association studies by combining approaches such as genotype imputation and multi-trait analysis improves the ability to detect quantitative trait loci associated with polygenic traits, such as body traits. Results: A multi-trait genome-wide association study (mtGWAS) was performed to identify quantitative trait loci (QTL) and genes associated with body traits in Nile tilapia (Oreochromis niloticus) using genotypes imputed to whole-genome sequences (WGS). To increase the statistical power of mtGWAS for the detection of genetic associations, summary statistics from single-trait genome-wide association studies (stGWAS) for eight different body traits recorded in 1309 animals were used. The mtGWAS increased the statistical power from the original sample size from 13 to 44%, depending on the trait analyzed. The better resolution of the WGS data, combined with the increased power of the mtGWAS approach, allowed the detection of significant markers which were not previously found in the stGWAS. Some of the lead single nucleotide polymorphisms (SNPs) were found within important functional candidate genes previously associated with growth-related traits in other terrestrial species. For instance, we identified SNP within the α1,6-fucosyltransferase (FUT8), solute carrier family 4 member 2 (SLC4A2), A disintegrin and metalloproteinase with thrombospondin motifs 9 (ADAMTS9) and heart development protein with EGF like domains 1 (HEG1) genes, which have been associated with average daily gain in sheep, osteopetrosis in cattle, chest size in goats, and growth and meat quality in sheep, respectively. Conclusions: The high-resolution mtGWAS presented here allowed the identification of significant SNPs, linked to strong functional candidate genes, associated with body traits in Nile tilapia. These results provide further insights about the genetic variants and genes underlying body trait variation in cichlid fish with high accuracy and strong statistical support.es_ES
Patrocinadordc.description.sponsorshipProduction Development Corporation (CORFO project) a Chilean governmental organization 14EIAT-28667 Fondecyt/Conicyt Postdoctoral Grant 3190553 Nucleo Milenio INVASAL - Chile's government program, Iniciativa Cientifica Milenio from Ministerio de Economia, Fomento y Turismoes_ES
Lenguagedc.language.isoenes_ES
Publisherdc.publisherBMCes_ES
Type of licensedc.rightsAttribution-NonCommercial-NoDerivs 3.0 Chile*
Link to Licensedc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/3.0/cl/*
Sourcedc.sourceBMC Genomicses_ES
Keywordsdc.subjectBody traitses_ES
Keywordsdc.subjectGenome-wide association studyes_ES
Keywordsdc.subjectGenotype imputationes_ES
Keywordsdc.subjectQuantitative trait locies_ES
Keywordsdc.subjectOreochromis niloticuses_ES
Keywordsdc.subjectMulti-traites_ES
Títulodc.titleMulti-trait GWAS using imputed high-density genotypes from whole-genome sequencing identifies genes associated with body traits in Nile tilapiaes_ES
Document typedc.typeArtículo de revistaes_ES
Catalogueruchile.catalogadorcfres_ES
Indexationuchile.indexArtículo de publicación ISIes_ES


Files in this item

Icon

This item appears in the following Collection(s)

Show simple item record

Attribution-NonCommercial-NoDerivs 3.0 Chile
Except where otherwise noted, this item's license is described as Attribution-NonCommercial-NoDerivs 3.0 Chile