IurV, encoded by ORF VCA0231, is involved in the regulation of iron uptake genes in vibrio cholerae
Author
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Sachman Ruiz, Bernardo
Author
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Ibarra, José Antonio
Author
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Estrada de los Santos, Paulina
Author
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Torres Muñoz, Alexia
Author
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Giménez, Begoña
Author
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Salazar Garrido, Juan Carlos
Author
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García Angulo, Víctor Antonio
Admission date
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2021-04-05T22:51:02Z
Available date
dc.date.available
2021-04-05T22:51:02Z
Publication date
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2020
Cita de ítem
dc.identifier.citation
Genes 2020, 11, 1184
es_ES
Identifier
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10.3390/genes11101184
Identifier
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https://repositorio.uchile.cl/handle/2250/178942
Abstract
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The pathogen Vibrio cholerae has multiple iron acquisition systems which allow bacteria to exploit a variety of iron sources across the different environments on which it thrives. The expression of such iron uptake systems is highly regulated, mainly by the master iron homeostasis regulator Fur but also by other mechanisms. Recently, we documented that the expression of many of the iron-responsive genes is also modulated by riboflavin. Among them, the open reading frame VCA0231, repressed both by riboflavin and iron, encodes a putative transcriptional regulator of the AraC/XylS family. Nonetheless, the genes or functions affected by this factor are unknown. In the present study, a series of in silico analyses was performed in order to identify the putative functions associated with the product of VCA0231. The STRING database predicted many iron uptake genes as functional partners for the product of VCA0231. In addition, a genomic neighborhood analysis with the Enzyme Function Initiative tools detected many Pfam families involved in iron homeostasis genetically associated with VCA0231. Moreover, a phylogenetic tree showed that other AraC/XylS members known to regulate siderophore utilization in bacteria clustered together and the product of VCA0231 localized in this cluster. This suggested that the product of VCA0231, here named IurV, is involved in the regulation of iron uptake processes. RNAseq was performed to determine the transcriptional effects of a deletion in VCA0231. A total of 52 genes were overexpressed and 21 genes were downregulated in response to the iurV deletion. Among these, several iron uptake genes and other iron homeostasis-related genes were found. Six gene ontology (GO) functional terms were enriched in the upregulated genes, of which five were related to iron metabolism. The regulatory pattern observed in the transcriptomics of a subset of genes was independently confirmed by quantitative real time PCR analysis. The results indicate that IurV is a novel regulator of the AraC/XylS family involved in the repression of iron uptake genes. Whether this effect is direct or indirect remains to be determined.
es_ES
Patrocinador
dc.description.sponsorship
Vicerrectoria de Investigacion y Desarrollo, University of Chile
ENLACE ENL 10/18