Bacterial diversity and occurrence of ammonia-oxidizing bacteria in the Atacama Desert soil during a "desert bloom" event

Abstract

The Atacama Desert, located in northern Chile, is one of the driest deserts on the Earth. However, in some years, short and sporadic rainfall in the southern end of this desert has increased the soil moisture that produces ephemeral “desert bloom”. Our goal was to assess the composition of the bacterial community and determine variations in the ammonia-oxidizing bacteria guild diversity from soils collected during the course of the “desert bloom” event. The bacterial composition from this arid soil was determined by cloning and sequencing the 16S rRNA gene. A relatively high diversity of clones belonging to 14 bacterial groups was detected. The ammonia-oxidizers showed a significantly higher diversity of amoA gene clones after the “desert bloom” than during or at the beginning of this event. All sequences obtained were related to Nitrosospira genera and environmental clones. These results suggest that the diversity of ammonia-oxidizing bacteria in this arid soil can be affected by the occurrence of “desert bloom”.